PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011382
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 138aa    MW: 15408.7 Da    PI: 4.2539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58668791PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.8e-13996192
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
               f+k+l   d ++ + + +p +f+++h+++k  +   ++++ +g  sW+vk+  ++ +g + +++GW++ v + +L   Df+vF+l+++s+f+l
  Lsa011382  9 FLKIL--QDPSAASYIAIPPDFVRDHMENK-IPESSIIRSVTGeHSWSVKI--KNIDGIHCFADGWNNVVADSQLGLWDFLVFSLVDESTFTL 96
               66777..4444455589*********5443.44455667765559******..********************************99999966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-156104IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-12799No hitNo description
SuperFamilySSF1019363.34E-167109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.5327102IPR003340B3 DNA binding domain
SMARTSM010191.7E-99102IPR003340B3 DNA binding domain
PfamPF023621.1E-10997IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MATRYQPSFL KILQDPSAAS YIAIPPDFVR DHMENKIPES SIIRSVTGEH SWSVKIKNID  60
GIHCFADGWN NVVADSQLGL WDFLVFSLVD ESTFTLTSFG PNGCEKKFPS EIPEKNGKEE  120
EEEEEDNNNN NGAGDHGX
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-11B3 family protein